Publications

2017

Takáč T, Šamajová O, Luptovčiak I, Pechan T, Šamaj J (2017) Feedback microtubule control and microtubule-actin cross-talk in Arabidopsis revealed by integrative proteomic and cell biology analysis of KATANIN 1 mutants. Molecular & Cellular Proteomics 16, 1591-1609.

Vyplelová P, Ovečka M, Šamaj J (2017) Alfalfa root growth rate correlates with progression of microtubules during mitosis and cytokinesis as revealed by environmental light-sheet microscopy. Frontiers in Plant Science 8:1870.

Komis G, Luptovčiak I, Ovečka M, Samakovli D, Šamajová O, Šamaj J (2017) Katanin effects on dynamics of cortical microtubules and mitotic arrays in Arabidopsis thaliana revealed by advanced live-cell imaging. Frontiers in Plant Science 8:866.

Luptovčiak I, Samakovli D, Komis G, Šamaj J (2017) KATANIN 1 is essential for embryogenesis and seed formation in Arabidopsis. Frontiers in Plant Science 8:728.

Luptovčiak I, Komis G, Takáč T, Ovečka M, Šamaj J (2017) Katanin: a sword cutting microtubules for cellular, developmental, and physiological purposes. Frontiers in Plant Science 8:1982.

Takáč T, Šamajová O, Šamaj J (2017) Integrating cell biology and proteomic approaches in plants. Journal of Proteomics 169, 165-175.

Takáč T, Bekešová S, Šamaj J (2017) Actin depolymerization-induced changes in proteome of Arabidopsis roots. Journal of Proteomics 153, 89-99.

Smertenko A, Assaad F, Baluška F, Bezanilla M, Buschmann H, Drakakaki G, Hauser MT, Janson M, Mineyuki Y, Moore I, Müller S, Murata T, Otegui MS, Panteris E, Rasmussen C, Schmit AC, Šamaj J , Samuels L, Staehelin LA, Van Damme D, Wasteneys G, Žárský V (2017) Plant Cytokinesis: Terminology for Structures and Processes. Trends in Cell Biology 27, 885-894.

Latrasse D, Jégu T, Li H, de Zelicourt A, Raynaud C, Legras S, Gust A, Šamajová O, Veluchamy A, Rayapuram N, Ramirez-Prado JS, Kulikova O, Colcombet J, Bigeard J, Genot B, Bisseling T, Benhamed M, Hirt H (2017) MAPK-triggered chromatin reprogramming by histone deacetylase in plant innate immunity. Genome Biology 18(1):131.

Krausko M, Perutka Z, Šebela M, Šamajová O, Šamaj J , Novák O, Pavlovič A (2017) The role of electrical and jasmonate signalling in the recognition of captured prey in the carnivorous sundew plant Drosera capensis. New Phytologist 213, 1818-1835.

Wu Y, Fan W, Li X, Chen H, Takáč T, Šamajová O, Fabrice MR, Xie L, Ma J, Šamaj J, Xu C (2017) Expression and distribution of extensins and AGPs in susceptible and resistant banana cultivars in response to wounding and Fusarium oxysporum. Scientific Reports 7, 42400.

Yu M, Liu H, Dong Z, Xiao J, Su B, Fan L, Komis G, Šamaj J , Lin J, Li R (2017) The dynamics and endocytosis of Flot1 protein in response to flg22 in Arabidopsis. Journal of Plant Physiology 215, 73-84 .

Krasylenko YA, Janošíková K, Kukushkin OV (2017) Juniper dwarf mistletoe (Arceuthobium oxycedri) in the Crimean peninsula: novel insights into its morphology, hosts and distribution. Botany 95, 897-911.

2016

Takáč T, Vadovič P, Pechan T, Luptovčiak I, Šamajová O, Šamaj J (2016) Comparative proteomic study of Arabidopsis mutants mpk4 and mpk6. Scientific Reports 6:28306.

Novák D, Kuchařová A, Ovečka M, Komis G, Šamaj J (2016) Developmental nuclear localization and quantification of GFP-tagged EB1c in Arabidopsis root using light-sheet microscopy. Frontiers in Plant Science 6:1187.

von Wangenheim D, Rosero A, Komis G, Šamajová O, Ovečka M, Voigt B, Šamaj J (2016) Endosomal interactions during root hair growth. Frontiers in Plant Science 6:1262.

Takáč T, Obert B, Rolčík J, Šamaj J (2016) Improvement of adventitious root formation in flax using hydrogen peroxide. New Biotechnology 33(5), 728-734.

Rosero A, Oulehlová S, Stillerová L, Schieberotvá P, Grunt M, Žárský V, Cvrčková F (2016) Arabidopsis FH1 Formin Affects Cotyledon Pavement Cell Shape by Modulating Cytoskeleton Dynamics. Plant Cell Physiology 57, 488-504.

Zalabák D, Johnová P, Plíhal O, Šenková K, Šamajová O, Jiskrová E, Novák O,Jackson D, Mohanty A, Galuszka P (2016) Maize cytokinin dehydrogenase isozymes are localized predominantly to the vacuoles. Plant Physiology and Biochemistry, 104, 114-124.

Šmehilová M, Dobrůšková J, Novák O, Takáč T , Galuszka P (2016) Cytokinin-specific glycosyltransferases possess different roles in cytokinin homeostasis maintenance. Frontiers in Plant Science, 7:1264.

2015

Komis G, Šamajová O, Ovečka M, Šamaj J (2015) Super-resolution Microscopy in Plant Cell Imaging. Trends in Plant Science 20(12), 834-843.

Ovečka M, Vaškebová L, Komis G, Luptovčiak I, Smertenko A, Šamaj J (2015) Preparation of plants for developmental and cellular imaging by light-sheet microscopy. Nature Protocols 10(8), 1234-47.

Komis G, Mistrík M, Šamajová O, Ovečka M, Bartek J, Šamaj J (2015) Superresolution live imaging of plant cells using structured illumination microscopy. Nature Protocols 10(8), 1248-63

Komis G, Luptovčiak I, Doskočilová A, Šamaj J (2015) Biotechnological aspects of cytoskeletal regulation in plants. Biotechnology Advances 33(6), 1043-1062

Křenek P, Šamajová O, Luptovčiak I, Doskočilová A, Komis G, Šamaj J (2015) Transient plant transformation mediated by Agrobacterium tumefaciens: Principles, methods and applications, Biotechnology Advances 33(6), 1024-1042

Takáč T, Šamaj J (2015) Advantages and limitations of shot-gun proteomic analyses on Arabidopsis plants with altered MAPK signaling. Frontiers in Plant Science 6:107

Bekešová S, Komis G, Křenek P, Vyplelová P, Ovečka M, Luptovčiak I, Illés P, Kuchařová A, Šamaj J (2015) Monitoring protein phosphorylation by acrylamide pendant Phos-Tag™ in various plants. Frontiers in Plant Science 6:336

Křenek P, Niks RE, Vels A, Vyplelová P, Šamaj J (2015) Genome-wide analysis of the barley MAPK gene family and its expression patterns in relation to Puccinia hordei infection. Acta Physiologia Plantarum 37:1-16

Wang L, Hong L, Lv X, Chen T, Li R, Xue Y, Jiang J, Jin B, Baluška F, Šamaj J, Wang X, Lin J (2015) Spatiotemporal dynamics of BRI1 receptor and its regulation by membrane microdomains in living Arabidopsis cells. Molecular Plant 8(9), 1334-1349

Yan Y, Takáč T, Li X, Chen H, Wang Y, Xu E, Xie L, Su Z, Šamaj J, Xu C (2015) Variable content and distribution of arabinogalactan proteins in banana (Musa spp.) under low temperature stress. Frontiers in Plant Science 6, 353

2014

Komis G, Mistrík M, Šamajová O, Doskočilová A, Ovečka M, Illés P, Bártek J, Šamaj J (2014) Dynamics and organization of cortical microtubules as revealed by superresolution structured illumination microscopy. Plant Physiology 165 (1), 129-148

Smékalová V, Luptovčiak I, Komis G, Šamajová O, Ovečka M, Doskočilová A, Takáč T, Vadovič P, Novák O, Pechan T, Ziemann A, Košútová P, Šamaj J (2014) Involvement of YODA and mitogen activated protein kinase 6 in Arabidopsis post-embryogenic root development through auxin up-regulation and cell division plane orientation. New Phytologist 203, 1175-1193

Ovečka M, Takáč T, Komis G, Vadovič P, Bekešová S, Doskočilová A, Smékalová V, Luptovčiak I, Šamajová O , Schweighofer A, Meskiene I, Jonak C, Křenek P,Lichtscheidl I, Skultety L, Hirt H, Šamaj J (2014) Salt-induced subcellular kinase relocation and seeding susceptibility caused by overexpression of Medicago SIMKK in Arabidopsis. Journal of Experimental Botany 65(9), 2335-2350

Takáč T, Šamajová O, Vadovič P, Pechan T, Košútová P, Ovečka M, Husičková A, Komis G, Šamaj J (2014) Proteomic and biochemical analyses show functional network of proteins involved in antioxidant defense of Arabidopsis anp2anp3 double mutant. Journal of Proteome Research, 13, 5347–5361

Berson T, Wangenheim D, Takáč T, Šamajová O, Rosero A, Ovečka M, Komis G, Stelzer E H, Šamaj J (2014) Trans-Golgi network localized small GTPase RabA1d is involved in cell plate formation and oscillatory root hair growth. BMC Plant Biology 14, 252.

Smékalová V, Doskočilová A, Komis G, Šamaj J (2014) Crosstalk between secondary messengers, hormones and MAPK modules during abiotic stress signalling in plants. Biotechnology Advances 32(1), 2-11

Ovečka M, Takáč T (2014) Managing heavy metal toxicity stress in plants: Biological and biotechnological tools. Biotechnology Advances 32(1), 73-86

Komis G, Šamaj J (2014) Plant MAP Kinases. Methods and Protocols. ISBN 978-1-4939-0921-6, Springer, Berlin, Heidelberg, pp. 266

Křenek P, Smékalová V (2014) Quantification of stress-induced mitogen-activated protein kinase expressional dynamic using reverse transcription quantitative real-time PCR. Methods in Molecular Biology 1171, 13-25

Komis G, Takáč T, Bekešová S, Vadovič P, Šamaj J (2014) Affinity-Based SDS PAGE Identification of Phosphorylated Arabidopsis MAPKs and Substrates by Acrylamide Pendant Phos-Tag™. Methods in Molecular Biology 1171, 47-63

Šamajová O, Komis G, Šamaj J (2014) Immunofluorescent Localization of MAPKs and Colocalization with Microtubules in Arabidopsis Seedling Whole-Mount Probes. Methods in Molecular Biology 1171, 107-115

Ovečka M, Šamajová O, Baluška F, Šamaj J (2014) Immunofluorescent Localization of MAPKs in Steedman’s Wax Sections. Methods in Molecular Biology 1171, 117-130

Doskočilová A, Luptovčiak I, Smékalová V, Šamaj J (2014) Fluorescent Protein Tagging of Arabidopsis MAPKs for In Vivo Localization Studies. Methods in Molecular Biology 1171, 131-145

Takáč T, Pechan T, Šamajová O, Šamaj J (2014) Integrative chemical proteomics and cell biology methods to study endocytosis and vesicular trafficking in Arabidopsis. Methods in Molecular Biology 1209, 265-283

Ovečka M , Lichtscheidl I, Šamaj J (2014) Live microscopy analysis of endosomes and vesicles in tip-growing root hairs. Methods in Molecular Biology 1209, 31-44

Bahaji A, Li J, Sánchez-López ÁM, Baroja-Fernández E, Muñoz FJ, Ovečka M, Almagro G, Montero M, Ezquer I, Etxeberria E, Pozueta-Romero J (2014) Starch biosynthesis, its regulation and biotechnological approaches to improve crop yields. Biotechnology Advances 32(1), 87-106

2013

Šamajová O, Komis G, Šamaj J (2013) Emerging topics in the cell biology of mitogen-activated protein kinases. Trends in Plant Science 18(3), 140-148

Šamajová O, Plíhal O, Al-Yousif M, Hirt H, Šamaj J (2013) Improvement of stress tolerance in plants by genetic manipulation of mitogen-activated protein kinases. Biotechnology Advances 31(1),118-128

Takáč T, Pechan T, Šamajová O, Šamaj J (2013) Vesicular trafficking and stress response coupled to PI3K inhibition by LY294002 as revealed by proteomic and cell biological analysis. J Proteome Res 12(10), 4435-4448

Pechanova O, Takáč T, Šamaj J, Pechan T (2013) Maize proteomics: an insight to biology of important cereal crop. Proteomics 13 (3-4), 637-662

Ma L, Jiang S, Lin G, Cai J, Ye X, Chen H, Li M, Li H, Takáč T, Šamaj J, Xu C (2013) Wound-induced pectin methylesterases enhance banana (Musa spp. AAA) susceptibility to Fusarium oxysporum f. sp. cubense. Journal of Experimental Botany 64, 2219-2229

Švubová R, Ovečka M, Pavlovič A, Slováková L; Blehová A (2013) Cuscuta europaea plastid apparatus in various developmental stages: Localization of THF1 protein. Plant Signal Behav 8 (5), e24037.

Wang, X.; Shi, L.; Lin, G.; Pan, X.; Chen, H.; Wu, X.; Takáč T; Šamaj J; Xu, C (2013) A systematic comparison of embryogenic and non-embryogenic cells of banana (Musa spp. AAA): Ultrastructural, biochemical and cell wall component analyses. Scientia Horticulturae 159, 178-185

Farkaš P, Čížová A, Bekešová S, Bystrický S (2013) Comparison of EDC and DMTMM efficiency in glycoconjugate preparation. International Journal of Biological Macromolecules 60, 325-7

2012

Šamaj J (2012) Endocytosis in Plants. ISBN 978-3-642-32462-8, Springer, Berlin, Heidelberg, pp. 336

Šamajová O, Takáč T, Wangenheim D, Stelzer E, Šamaj J (2012) Update on methods and techniques to study endocytosis in plants. In: Šamaj J (ed) Endocytosis in plants, ISBN 978-3-642-32462-8, Springer, Berlin, Heidelberg, pp. 1-36

Ovečka M, Illés P, Lichtscheidl I, Derksen J, Šamaj J (2012) Endocytosis and vesicular recycling in root hairs and pollen tubes. In: Šamaj J (ed) Endocytosis in plants, ISBN 978-3-642-32462-8, Springer, Berlin, Heidelberg, pp. 81-106

Li R, Liu P, Wan Y, Chen T, Wang Q, Mettbach U, Baluška F, Šamaj J, Fang X, Lucas WJ, Lin J (2012) A membrane microdomain-associated protein, AtFlot1, is involved in a clathrin-independent endocytic pathway and is required for seedling development in Arabidopsis. The Plant Cell 24, 2105-2122

Takáč T, Pechan T, Šamajová O, Ovečka M, Richter H, Eck C, Niehaus K, Šamaj J (2012) Wortmannin treatment induces changes in Arabidopsis root proteome and post-Golgi compartments. J Proteome Res 11 (6), 3127-3142

Uváčková Ľ, Takáč T, Boehm N, Obert B, Šamaj J (2012). Proteomic and biochemical analysis of maize anthers after cold pretreatment and induction of androgenesis reveals an important role of anti-oxidative enzymes. J Proteomics 75(6),1886-1894

Bleho J, Obert B, Takáč T, Petrovská B, Heym C, Menzel D, Šamaj J (2012) ER disruption and GFP degradation during non-regenerable transformation of flax with Agrobacterium tumefaiens. Protoplasma 249(1),53-63

Kenderešová L, Staňová A, Pavlovkin J, Ďurišová E, Nadubinská M, Čiamporová M, Ovečka M (2012) Early Zn2+-induced effects on the membrane potential account for primary heavy metal susceptibility in tolerant and sensitive Arabidopsis species. Annals of Botany 110, 445-459

Ma L, Xie L, Lin G, Jiang S, Chen H, Li H, Takáč T, Šamaj J, Xu C (2012) Histological changes and differences in activities of some antioxidant enzymes and hydrogen peroxide content during somatic embryogenesis of musa AAA cv. Yueyoukang 1. Scientia Horticulturae 144,87-92

Chen T, Wang X, von Wangenheim D, Zheng M, Šamaj J, Ji W, Lin J (2012) Probing and tracking organelles in living plant cells. Protoplasma 249 (Suppl 2), S157-S167

Staňová A, Ďurišová E, Banásová V, Gurinová E, Nadubinská M, Kenderešová L, Ovečka M, Čiamporová M (2012) Root system morphology and primary root anatomy in natural non-metallicolous and metallicolous populations of three Arabidopsis species differing in heavy metal tolerance. Biologia 67(3), 505-516

Ovečka M, Bahaji A, Muñoz FJ, Almagro G, Ezquer I, Baroja-Fernández E, Li J, Pozueta-Romero J (2012) A sensitive method for confocal fluorescence microscopic visualization of starch granules in iodine stained samples. Plant Signal Behav 7(9), 1146-1150

2011

Komis G, Illés P, Beck M, Šamaj J (2011) Microtubules and mitogen-activated protein kinase signalling. Curr Opin Plant Biol 14(6), 650-657

Beck M, Komis G, Ziemann A, Menzel D, Šamaj J (2011) Mitogen-activated protein kinase 4 is involved in the regulation 1 of mitotic and cytokinetic microtubule transitions in Arabidopsis thaliana. New Phytologist 189(4), 1069-1083

Takáč T, Pechan T, Richter H, Mueller J, Eck C, Boehm N, Obert B, Ren H, Niehaus K, Šamaj J (2011) Proteomics on brefeldin A-treated Arabidopsis roots reveals profilin 2 as a new protein involved in the cross-talk between vesicular trafficking and the actin cytoskeleton. J Proteome Res 10(2), 488-501

Takáč T, Pechan T, Šamaj J (2011) Differential proteomics of plant development. J Proteomics 74(5), 577-588

Xu C, Zhao L, Pan X, Šamaj J (2011) Developmental Localization and Methylesterification of Pectin Epitopes during Somatic Embryogenesis of Banana (Musa spp. AAA). PLoS ONE 6(8):e22992

Xu C, Takáč T, Burbach C, Menzel D, Šamaj J (2011) Developmental localization and the role of hydroxyproline rich glycoproteins during somatic embryogenesis of banana (Musa spp. AAA). BMC Plant Biol 11:38

Kašpárek P, Křenek P, Buryová H, Suchanová S, Beck IM, Sedláček R (2011) Transgenic mouse model expressing tdTomato under involucrin promoter as a tool for analysis of epidermal differentiation and wound healing. Transgenic Res (published online Oct 22, 2011)

Vleeshouwers V, Finkers R, Budding D, Visser M, Jacobs M, van Berloo R, Pel M, Champouret N, Bakker E, Křenek P, Rietman H, Huigen D, Hoekstra R, Goverse A, Vosman B, Jacobsen E, Visser R (2011) SolRgene: an online database to explore disease resistance genes in tuber-bearing Solanum species. BMC Plant Biology 11:116

Reiss K, Meyer-Hoffert U, Fischer J, Sperrhacke M, Wu Z, Dimitrieva O, Křenek P, Suchanova S, Buryova H, Brauer R, Sedlacek R (2011) Expression and regulation of murine SPINK12, a potential orthologue of human LEKTI2. Exp Dermatol 20, 905-910

Pan X, Yang X, Lin G, Zou R, Chen H, Šamaj J, Xu C (2011). Ultrastructural changes and the distribution of arabinogalactan proteins during somatic embryogenesis of banana (Musa spp. AAA). Physiol Plant 142(4):372-89

Xie D, Ma L, Šamaj J, Xu C (2011). Immunohistochemical analysis of cell wall hydroxyproline-rich glycoproteins in the roots of resistant and susceptible wax gourd cultivars in response to Fusarium oxysporum f. sp. Benincasae infection and fusaric acid treatment. Plant Cell Rep 30, 1555-1569

Konieczny R, Obert B, Bleho J, Novák O, Heym C, Tuleja M, Müller J, Strnad M, Menzel D, Šamaj J (2011) Stable transformation of Mesembryanthemum crystallinum (L.) with Agrobacterium rhizogenes harboring the green fluorescent protein targeted to the endoplasmic reticulum. Journal of Plant Physiology 168(7), 722-729

Fatima S, Mujib A, Šamaj J (2011) Anti-oxidant enzyme responses during in vitro embryogenesis in catharanthus roseus. Journal of Horticultural Science and Biotechnology 86, 569-74

2010

Beck M, Komis G, Müller J, Menzel D, Šamaj J (2010) Arabidopsis homologs of Nucleus- and Phragmoplast-Localized Kinase 2 and 3 and Mitogen-Activated Protein Kinase 4 are essential for microtubule organization. Plant Cell 22(3), 755-771

Müller J, Beck M, Mettbach U, Komis G, Hause G, Menzel D, Šamaj J (2010) Arabidopsis MPK6 is involved in cell division plane control during early root development, and localizes to the pre-prophase band, phragmoplast, trans-Golgi network and plasma membrane. Plant Journal 61, 234-248

Ovečka M, Berson T, Beck M, Derksen J, Šamaj J, Baluska F, Lichtscheidl IK (2010) Structural sterols are involved in both the initiation and tip growth of root hairs in Arabidopsis thaliana. Plant Cell 22(9), 2999-3019

Kriegs B, Jansen M, Hahn K, Peisker H, Šamajová O, Beck M, Braun S, Ulbrich A, Baluška F, Schulz M (2010) Cyclic monoterpene mediated modulations of Arabidopsis thaliana phenotype: Effects on the cytoskeleton and on the expression of selected genes. Plant Signaling and Behavior 5(7), 832-838

Panteris E, Komis G, Adamakis I-DS, Šamaj J, Bosabalidis AM (2010) MAP65 in tubulin/colchicine paracrystals of Vigna sinensis root cells: Possible role in the assembly and stabilization of atypical tubulin polymers. Cytoskeleton 67(3), 152-160

Zheng M, Wang Q, Teng Y, Wang X, Wang F, Chen T, Šamaj J, Lin J, Logan DC (2010) The speed of mitochondrial movement is regulated by the cytoskeleton and myosin in Picea wilsonii pollen tubes. Planta 231, 779-791

Wang Y, Zhu Y, Ling Y, Zhang H, Liu P, Baluska F, Šamaj J, Lin J, Wang Q (2010) Disruption of actin filaments induces mitochondrial Ca2+ release to the cytoplasm and [Ca2+]c changes in Arabidopsis root hairs. BMC Plant Biology, Mar 24;10:53

2000-2009

2009

Liu P, Zhang L, Li R-L, Wang Q-L, Niehaus K, Baluška F, Šamaj J, Lin J (2009) Lipid microdomain polarization is required for NADPH oxidase-dependent ROS signaling in Picea meyeri pollen tube tip growth. Plant Journal 60, 303-313

Konieczny R, Kepczynski J, Pilarska M, Cembrowska D, Menzel D, Šamaj J (2009) Cytokinin and ethylene affect auxin transport-dependent rhizogenesis in hypocotyls of common ice plant (Mesembryanthemum crystallinum L.). Journal of Plant Growth Regulation 28, 331-340

Zheng M, Beck M, Müller J, Wang X,  Wang Q, Baluška F, Logan DC, Šamaj J, Lin J (2009) Cytoskeleton-dependent mitochondrial movements in Arabidopsis root hairs. PLoS One, June 18,4(6): e5961, 1-14

Wang Y, Chen T, Hao H, Liu P, Zheng M, Baluska F, Šamaj J, Lin J (2009) Nitric oxide is involved in cell wall construction in Pinus bungeana pollen tubes by modulating extracellular Ca2+ influx and actin filaments organization. New Phytologist 182, 851-862

Obert B, Zackova Z, Šamaj J, Preťová A (2009) Doubled haploid production in flax (Linum usitatissimum L.). Biotechnology Advances 27, 371-375

Chen T, Wu X, Chen Y, Li X, Zheng M,  Baluska F, Šamaj J, Lin J (2009) Combined proteomic and cytological analysis of Ca2+ -Calmodulin regulation in Picea meyeri pollen tube growth. Plant Physiology 149, 1111-1126

Wang F, Jing Y, Wang Z, Mao T, Šamaj J, Yuan M, Ren H (2009) Arabidopsis profilin isoforms, PRF1 and PRF2 show distinctive binding activities and subcellular distributions. Journal of Integrative Plant Biology 51, 113-121

2008

Ovečka M, Lichtscheidl I, Baluska F, Šamaj J, Volkmann D, Hirt H (2008) Regulation of root hair tip growth: can mitogen-activated protein kinases be taken into acount? In: Blume YB, Baird WV, Yemets AI, Breviario D (eds) The Plant Cytoskeleton: a Key Tool for Agro-Biotechnology. ISBN: 978-1-4020-8841-4. Springer, Heidelberg, pp. 91-128

Wu X, Chen T, Zheng M, Chen Y, Teng N, Šamaj J, Baluska F, Lin J (2008) Integrative proteomic and cytological analysis of inhibitory effects of nifedipine on calcium functions in Pinus 
bungeana pollen tube. Journal of Proteome Research 7, 4299-4312

Chen KM, Wu GL, Wang YH, Tian CT, Šamaj J, Baluska F, Lin J (2008) The block of intracellular calcium release affects the pollen tube development of Picea wilsonii by changing the deposition of cell wall components. Protoplasma 233, 39-49

Šamaj J, Salaj J, Obert B, Baluska F, Menzel D, Volkmann D (2008) Calreticulin mRNA and protein are localized to protein bodies in storage maize callus cells. Plant Cell Reports 27, 231-239

Šamaj J, Salaj T, Matúsová R, Salaj J, Takáč T, Šamajová O, Volkmann D (2008) Arabinogalactan-protein epitope Gal4 is differentially regulated and localized in cell lines of hybrid fir (Abies alba x Abies cephalonica) with different embryogenic and regeneration potential. Plant Cell Reports 27, 221-229

Schlicht M, Šamajová O, Schachtschabel D, Mancuso S, Menzel D, Boland W, Baluska F (2008) D’orenone blocks polarized tip growth of root hairs by interfering with the pin2-mediated auxin transport network in the root apex. Plant Journal 55, 709–17

Fang K, Wanga Y, Yua T, Lingyun Z, Baluska F, Šamaj J, Lin J (2008) Isolation of de-exined pollen and cytological studies of the pollen intines of Pinus bungeana Zucc. Ex Endl. and Picea wilsonii Mast. Flora 203, 332-340

2007

Li S, Šamaj J, Franklin-Tong VE (2007) A MAPK signals to programmed cell death induced by self-incompatibility in Papaver pollen. Plant Physiol 145, 235-245

Müller J, Mettbach U, Menzel D, Šamaj J (2007) Molecular dissection of endosomal compartments in plants. Plant Physiol 145, 293-304

Šamaj J, Thelen J (2007) Plant Proteomics. ISBN 978-3-540-72616-6, Springer, Berlin, Heidelberg, pp. 370

Chen T, Wu X, Chen Y, Böhm N, Lin J, Šamaj J (2007) Pollen and pollen tube proteomics. In: Šamaj J, Thelen JJ (eds) Plant proteomics. Springer, Heidelberg, pp. 270-282

Junaid A, Mujib A, Bhat MA, Sharma MP, Šamaj J (2007) Somatic embryogenesis and plant regeneration in Catharanthus roseus. Biologia Plantarum 51, 641-646

Müller J, Menzel D, Šamaj J (2007) Cell-type specific disruption and recovery of the cytoskeleton in Arabidopsis epidermal root cells upon heat shock stress. Protoplasma 230, 231-242

Kempa S, Rozhon W, Šamaj J, Erban A, Baluška F, Becker T, Haselmayer J, Schleiff E, Kopka J, Hirt H, Jonak C (2007) A plastid-localized glycogen synthase kinase 3 modulates stress tolerance and carbohydrate metabolism. Plant Journal 49, 1076-1090

Dhonukshe P, Šamaj J, Baluska F, Friml J (2007) A unifying new model of cytokinesis for the dividing plant and animal cells. Bioessays 29, 371-381

Chen T, Teng N, Wu X, Wang Y, Tang W, Šamaj J, Baluška F, Lin J (2007) Disruption of actin filaments by latrunculin B affects cell wall construction in Picea meyeri pollen tube by disturbing vesicle trafficking. Plant Cell Physiology 48, 19-30

2006

Šamaj J, Baluška F, Menzel (2006) Plant endocytosis. ISBN 3-540-28197-5, Springer, Berlin, Heidelberg, pp. 314

Mujib A, Šamaj J (2006) Somatic embryogenesis. ISBN 3-540-28717-5, Springer, Berlin, Heidelberg, pp. 357

Šamaj J, Müller J, Beck M, Böhm N, Menzel D (2006) Vesicular trafficking, cytoskeleton and signalling in root hairs and pollen tubes. Trends in Plant Science 11, 594-600

Wang X, Teng Y, Wang Q, Li X, Zheng M, Šamaj J, Baluška F, Lin J (2006) Dynamic imaging of vesicles in living pollen tubes of Picea meyeri using evanescent wave microscopy. Plant Physiology 141, 1591-1603

Sheng X, Hu Z, Lü H, Wang X, Baluška F, Šamaj J, Lin J (2006) Roles of the ubiquitin/proteasome pathway in pollen tube growth with emphasis on MG132-induced alterations in ultrastructure, actin cytoskeleton, and cell wall components. Plant Physiology 141, 1578-1590

Hause G, Šamaj J, Menzel D, Baluška F (2006) Fine structural analysis of brefeldin A-induced compartment formation after high-pressure freeze fixation of maize root epidermis: Compound exocytosis resembling cell plate formation during cytokinesis. Plant Sign Behav 1, 134-139

Chen Y, Shen S, Guo Y, Lin J, Baluška F, Šamaj J (2006) Differential display proteome analysis of Picea meyeri pollen germination and pollen tube growth after actin-depolymerization by Latrunculin B. Plant Journal 47,174-195

Dhonukshe P, Baluška F, Hlavacka A, Schlicht M, Šamaj J, Friml J, Gadella Jr. TWJ (2006) Endocytosis of cell surface material mediates cell plate formation during plant cytokinesis. Dev. Cell 10, 137-150

Šamaj J, Chaffey N, Tirlapur U, Jasik J, Hlavacka A, Cui ZF, Volkmann D, Menzel D, Baluška F (2006) Actin and myosin VIII in plant cell-cell channels. In: Baluška F, Volkmann D, Barlow PW (eds): Cell-cell channels. Landes Biosciences (published on line 12, 2005)

Pretová A, Šamaj J, Obert B (2006) Cytological, biochemical and physiological aspects of somatic embryo formation in potato and flax. In: Mujib A, Šamaj J (eds): Somatic embryogenesis in plants. Springer, Heidelberg, pp. 235-245

Šamaj J, Bobák M, Blehová A and Pretová A (2005) Importance of cytoskeleton and cell wall in somatic embryogenesis. In: Mujib A, Šamaj J (eds): Somatic embryogenesis in plants. Springer, Heidelberg, pp. 35-50

2005

Šamaj J (2005) Methods and molecular tools to study endocytosis in plants – an overview In: Šamaj J, Baluška F, Menzel (eds): The Plant Endocytosis. Springer, Heidelberg, pp. 1-17

Baluška F, Baroja-Fernandez E, Pozueta-Romero J, Hlavacka A, Etxeberria E, Šamaj J (2005) Endocytic uptake of cell wall components and nutrients, cell wall molecules and fluidized cell wall portions into heterotrophic plant cells. In: Šamaj J, Baluška F, Menzel (eds): The Plant Endocytosis. Springer, Heidelberg, pp. 19-35

Šamaj J, Baluška F, Voigt B, Volkmann D, Menzel D (2005) Endocytosis and actomyosin cytoskeleton. In: Šamaj J, Baluška F, Menzel (eds): The Plant Endocytosis. Springer, Heidelberg, pp. 233-244

Wang Q, Kong L, Li Y, Lin J, Šamaj J, Baluška F (2005) Effects of Brefeldin A on pollen germination and tube growth: antagonistic effects on endocytosis and secretion. Plant Physiol. 139, 1692-1703

Baluška F, Barlow PW, Baskin TI, Chen R, Feldman L, Forde BG, Geisler M, Jernstedt J, Menzel D, Muday GK, Murphy A, Šamaj J, Volkmann D. (2005) What is apical and what is basal in plant root development? Trends Plant Sci. 10, 409-411

Voigt B, Timmers ACJ, Šamaj J , Müller J, Baluška F, Menzel D (2005) GFP-FABD2 Fusion Construct allows in vivo visualization of the dynamic actin cytoskeleton in all cells of Arabidopsis seedlings. Eur. J. Cell Biol. 84, 595-608

Voigt B, Timmers ACJ, Šamaj J , Hlavacka A, Ueda T, Preuss M, Nielsen E, Mathur J, Emans N, Stenmark H, Nakano A, Baluška F, Menzel D (2005) Actin-propelled motility of endosomes is tightly linked to polar tip-growth of root hairs. Eur. J. Cell Biol. 84, 609-621

Šamaj J, Read ND, Volkmann D, Menzel D, Baluška F (2005) The endocytic network in plants. Trends Cell Biol, 15, 425-433

2004

Šamaj J , Baluška F, Hirt H (2004) From signal to cell polarity: mitogen-activated protein kinases as sensors and effectors of cytoskeleton dynamicity. Journal of Experimental Botany 55, 189-198

Baluška F, Šamaj J, Hlavacka A, Kendrick-Jones J, Volkmann D (2004) Myosin VIII and F-actin enriched plasmodesmata in maize root inner cortex cells accomplish fluid-phase endocytosis via an actomyosin-dependent process. Journal of Experimental Botany 55, 463-473

Šamaj J , Baluška F, Menzel D (2004) New signalling molecules regulating root hair tip growth. Trends in Plant Science 9, 217-220

Šamaj J , Baluška F, Voigt B, Schlicht M, Volkmann D, Menzel D (2004) Endocytosis, actin cytoskeleton and signaling. Plant Physiology 135, 1150-1161

Nowikovsky K, Froschauer EM, Zsurka G, Šamaj J, Reipert S , Kolisek M, Wiesenberger G, Schweyen RJ (2004) The LETM1/YOL027 gene family encodes a factor of the mitochondrial K + homeostasis with a potential role in the Wolf-Hirschhorn syndrome. Journal of Biological Chemistry 279, 30307-30315

Obert B, Dedičová B, Hricová A, Šamaj J, Pret'ová A (2004) Flax anther culture: effect of genotype, cold treatment and media. Plant Cell Tiss Org Cult 79, 233-238

Bobák M, Šamaj J , Pret'ová A, Blehová A, Hlinkov á E, Ovecka M, Hlavacka A, Kutarňová Z (2004) The histological analysis of indirect somatic embryogenesis on Drosera spathulata Labill. Acta Physiologiae Plantarum 26, 353-361

2003

Kolisek M, Zsurka G, Šamaj J, Weghuber J, Schweyen RJ, Schweigel M (2003) Mrs2p is an essential component of the major electrophoretic Mg 2+ influx system in mitochondria. EMBO Journal 22, 1235-1244

Šamaj J , Baluška F, Pretova A, Volkmann D (2003) Auxin deprivation induces a developmental switch in maize somatic embryogenesis involving redistribution of microtubules and actin filaments from endoplasmic to cortical cytoskeletal arrays. Plant Cell Reports 21, 940-945

Baluška F, Šamaj J, Menzel D (2003) Polar transport of auxin: carrier-mediated flux across the plasma membrane or neurotransmitter-like secretion? Trends in Cell Biology 13, 282-285

Van Gestel, Slegers H, von Witsch, Šamaj J, Baluška F, Verbelen J-P (2003) Immunological evidence for the presence of plant homologues of the actin related protein Arp3 in tobacco and maize: subcellular localization to actin-enriched pit fields and emerging root hairs. Protoplasma 222, 45-52

Šamaj J, Ovecka M, Hlavacka A, Lecourieux F, Meskiene I, Lichtscheidl I, Lenart P, Salaj J, Volkmann D, Bögre L, Baluška F, Hirt H (2003)Involvement of MAP kinase SIMK and actin cytoskeleton in the regulation of root hair tip growth. Cell Biology International 27, 257-259

Baluška F, Šamaj J, Wojtaszek P, Volkmann D, Menzel D (2003) Cytoskeleton-plasma membrane-cell wall continuum in plants. Emerging links revisited. Plant Physiology 133, 482-491

Rumyantseva NI, Šamaj J, Ensikat HJ, Sal'nikov VV, Kostyukova YA, Baluska F, Volkmann D (2003) Changes in the extracellular matrix surface network during cyclic reproduction of proembryonic cell complexes in the Fagopyrum tataricum (L.) gaertn callus. Dokl. Biol. Sci. 391, 375-378

Bobák M, Šamaj J , Hlinkov á E, Hlavacka A, Ovecka M (2003) Extracellular matrix in early stages of direct somatic embryogenesis in leaves of Drosera spathulata. Biologia Plantarum 47, 161-166

2002

Šamaj J, Ensikat HJ, Barthlott W, Volkmann D (2002): Immunogold-silver scanning electron microscopy using glycerol liquid substitution. In: Hacker GW, Gu J (eds): Gold and silver staining: techniques in molecular morphology. CRC Press, Boca Raton , London , new York , Washington D.C., pp. 223-234

Šamaj J, Boudet AM (2002): Immunolocalisation of enzymes of lignification. In: Chaffey NJ (ed): Wood formation in trees: developmental cell biological techniques. Taylor and Francis, London , New York , pp. 203-216

Baluška F, Hlavačka A, Šamaj J, Palme K, Matoh T, McCurdy DW, Menzel D, Volkmann D (2002) F-actin-dependent endocytosis of cell wall pectins in meristematic root cells: insights from brefeldin A-induced compartments. Plant Physiology 130 , 422-431

Šamaj J, Ovecka M, Hlavacka A, Lecourieux F, Meskiene I, Lichtscheidl I, Lenart P, Salaj J, Volkmann D, Bögre L, Baluška F, Hirt H (2002) Involvement of the mitogen-activated protein kinase SIMK in regulation of root hair tip-growth. EMBO Journal 21, 3296-3306

2000

Šamaj J , Šamajová O, Peters M, Baluška F, Lichtscheidl I, Knox JP, Volkmann D, (2000) Immunolocalization of LM2 arabinogalactan-protein epitope associated with endomembranes of plant cells. Protoplasma 212, 186-196

Vitha S, Baluška F, Braun M, Šamaj J, Volkmann D, Barlow PW (2000) Comparison of cryofixation and aldehyde fixation for plant actin immunocytochemistry: aldehydes do not destroy F-actin. Histochemical Journal 32, 457-466

Šamaj J , Peters M, Volkmann D, Baluška F (2000) Effects of myosin ATPase inhibitor 2,3-butanedione monoxime on distributions of myosins, F-actin, microtubules, and cortical endoplasmic reticulum in maize root apices. Plant and Cell Physiology 41, 571-582

Baluška F, Salaj J, Mathur J, Braun M, Jasper F, Šamaj J, Chua N-H, Barlow PW, Volkmann D (2000) Root hair formation: F-actin-dependent tip growth is initiated by local assembly of profilin-supported F-actin meshworks accumulated within expansin-enriched bulges. Developmental Biology 227, 618-632

Sivaguru M, Fujiwara T, Šamaj J , Baluška F, Yang Z, Osawa H, Maeda T, Mori T, Volkmann D, Matsumoto H (2000) Aluminium-induced 1,3- β -D-glucan inhibits cell-to-cell trafficking of molecules through plasmodesmata. A new mechanism of aluminium toxicity in plants. Plant Physiology 124, 991-1006

Ovecka M, Bobak M, Šamaj J (2000) A comparative structural analysis of direct and indirect shoot regeneration of papaver somniferum L. in vitro. Journal of Plant Physiology 157, 281-289

Dedicova B, Hricova A, Šamaj J , Obert B, Bobak M, Pretova A (2000) Shoots and embryo-like structures regenerated from cultured flax (Linum usitatissimum L.) hypocotyls segments. Journal of Plant Physiology 157, 372-334

1989-1999

1999

Šamaj J, Blehová A, Repčák M, Ovečka M, Bobák M (1999): Drosera species (sundew): in vitro culture and the production of plumbagin and other secondary metabolites. In: Bajaj YPS (ed): Biotechnology in agriculture and forestry 43, Medicinal plants XI, Springer Verlag, Berlin , Heidelberg , New York , Tokyo , pp. 105-135

Šamaj J , Baluška F, Bobák M, Volkmann D (1999) Extracellular matrix surface network of embryogenic units of friable maize callus contains arabinogalactan-proteins recognized by monoclonal antibody JIM4. Plant Cell Reports 18, 369-374

Šamaj J , Ensikat HJ, Baluška F, Knox JP, Barthlott W, Volkmann D (1999) Immunogold- localization of plant surface arabinogalactan-proteins using glycerol liquid substitution and scanning electron microscopy. Journal of Microscopy 193, 150-157

Šamaj J , Bobák M, Kubošníková D, Kolárik E, Krištín J, Ovečka M, Blehová A (1999) Bundle sheath cells are responsible for direct root regeneration from leaf explants of Helianthus occidentalis L. Journal of Plant Physiology 154, 89-94

Baluška F, Šamaj J, Volkmann D (1999) Proteins reacting with cadherin and catenin antibodies are present in maize showing tissue-, domain-, and development-specific associations with endoplasmic-reticulum membranes and actin microfilaments in root cells. Protoplasma 206, 174-187

Šamaj J , Braun M, , Baluška F, Ensikat HJ, Tsumuraya Y, Volkmann D (1999) Specific localization of arabinogalactan-protein epitopes at the surface of maize root hairs. Plant and Cell Physiology 40, 874-883

Baluška F, Šamaj J, Napier R, Volkmann D (1999) Maize calreticulin localizes preferentially to plasmodesmata in root apices. Plant Journal 19, 481-488

Reichelt S, Knight AE, Hodge TP, Baluška F, Šamaj J, Volkmann D, Kendrick–Jones J (1999) Characterisation of the unconventional myosin VIII in plant cells and its localization at the post-cytokinetic cell wall. Plant Journal 19, 555-568

Bobák M, Hlavačka A, Ovečka M, Šamaj J (1999): Effect of trifluralin and colchicine on the extracellular matrix surface networks during early stages of direct somatic embryogenesis of Drosera rotundifolia L. Journal of Plant Physiology 155, 387-392

1998

Goffner D, Van Doorsselaere J, Yahiaoui N, Šamaj J, Grima-Pettenati J, Boudet AM (1998) A novel aromatic alcohol dehydrogenase in higher plants: molecular cloning and expression. Plant Molecular Biology 36, 755-765

Šamaj J , Hawkins S, Lauvergeat V, Grima-Pettenati J, Boudet AM (1998) Immunogold localization of cinnamyl alcohol dehydrogenase 2 (CAD2) indicates a good correlation with cell specific activity of CAD2 promoter in transgenic poplar shoots. Planta 204, 437-443

Šamajová O, Šamaj J, Volkmann D, Edelmann H (1998) Occurrence of osmiophilic particles is correlated to elongation growth of higher plants. Protoplasma 202, 185-191

Šamaj J , Baluška F, Volkmann D (1998) Cell specific expression of two arabinogalactan-protein epitopes recognized by monoclonal antibodies JIM8 and JIM13 in maize roots. Protoplasma 204, 1-12

Bobák M, Šamaj J, Blehová A, Ovečka M, Novomeská S, Krištín J (1998) Morphology and ultrastructure of isolated gemmae of Drosera pygmaea and their in vitro germination. Biologia Plantarum 41, 169-176

1997

Ovečka M, Bobák M, Šamaj J (1997) Development of shoot primordia in tissue culture of Papaver somniferum L. Biologia Plantarum 39, 499-506

Oláh R, Masarovicová E, Šamaj J, Ovečka M, Bobák M, Krištín J, Egedová V (1997) Anatomical and morphological parameters of leaves and leaf petioles of Actinidia deliciosa. Biologia Plantarum 39, 271-280

Hawkins S, Šamaj J, Lauvergeat V, Boudet AM, Grima-Pettenati J (1997) Cinnamyl alcohol dehydrogenase (CAD): Identification of important new sites of promoter activity in transgenic poplar. Plant Physiology 113, 321-325

Baluška F, Šamaj J, Volkmann D, Barlow PW (1997) Impact of taxol-mediated stabilization of microtubules on nuclear morphology, ploidy levels and cell growth in maize roots. Biology of the Cell 89, 221-231

1996

Ovečka M, Bobák M, Erdelský K, Šamaj J,Blehová A, Krištín J (1996) Morphology and conversion ability of somatic embryos in long-term embryogenic callus culture of Papaver somniferum L. Biologia 51, 417-423

1995

Šamaj J, Bobák M, Blehová A, Krištín J, Auxtová-Šamajová O (1995) Developmental SEM observations of an extracellular matrix in embryogenic calli of Drosera rotundifolia and Zea mays. Protoplasma 186, 45-49

Bobák M, Blehová A, Krištín J, Ovečka M, Šamaj J(1995) Direct plant regeneration from leaf explants of Drosera rotundifolia cultured in vitro. Plant Cell, Tissue and Organ Culture 43, 43-49

Bobák M, Nádaská M, Šamaj J,Erdelský K, Ovečka M, Krištín, J (1995) The influence of elicitation on the ultrastructure and sanguinarine content in callus cells of Papaver somniferum L. Biologia Plantarum 37, 501-506

1994

Šamaj J, Okolot A, Bobák M, Gleba Yu (1994) Increase of callus and embryoid production from hypocotyl protoplasts of sunflower (Helianthus annuus L.) by culture in microdrops. Biologia Plantarum 36, 183-190

Šamaj J, Auxtová O, Bobák M (1994) Different regeneration potential of various sunflower genotypes (Helianthus annuus L.) in meristem culture. Biologia Plantarum 36, 309-311

Auxtová O, Šamaj J, Cholvadová B, Khandlová E (1994) Isoperoxidase and isopolyphenol oxidase spectrum in male and female tissues of Actinidia deliciosa in vitro. Biologia Plantarum 36, 535-541

1993

Bobák M, Blehová A, Šamaj J,Ovečka M, Krištín J (1993) Studies of organogenesis from the callus culture of sundew (Drosera spathulata Labill.). Journal of Plant Physiology 142, 251-253

Bobák M, Blehová A, Gajdoš J, Šamaj J(1993) Occurrence, genesis and ultrastructure of anthocyanoplast-like structures in callus cells of Drosera spathulata Labill. Acta Botanica Hungarica 38, 221-226

1990

Šamaj J, Bobák M, Erdelský K (1990) Histological-anatomical studies of organogenic callus of Papaver somniferum L. Biologia Plantarum 32, 14-18

1989

Bobák M, Šamaj J, Erdelský K (1989) Polymorphism of nuclei and nucleoli in organogenic callus of Papaver somniferum L. The Nucleus 32, 1-4

Šamaj J, Bobák M, Erdelský K (1988) Plastids in the organogenic callus cells of Papaver somniferum L. cultured on various media. Biologia 43, 577-588